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Sample GSM2458662 Query DataSets for GSM2458662
Status Public on Jan 14, 2017
Title IPF_1028, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.325003481
7892502 2.684000423
7892503 2.751866232
7892504 7.430812552
7892505 2.46994168
7892506 1.548377152
7892507 4.864691725
7892508 1.741991557
7892509 7.001025593
7892510 1.563109085
7892511 4.202758312
7892512 4.438056659
7892513 2.215846598
7892514 7.13694112
7892515 7.919922016
7892516 4.91219281
7892517 4.652327852
7892518 1.161257112
7892519 1.697172007
7892520 7.666658609

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458662_IPF_1028_3.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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