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Sample GSM2458660 Query DataSets for GSM2458660
Status Public on Jan 14, 2017
Title IPF_1028, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.33568661
7892502 2.540140864
7892503 2.31892726
7892504 7.379594381
7892505 1.57244106
7892506 2.035203544
7892507 4.306593797
7892508 2.689966142
7892509 7.757058685
7892510 2.189334317
7892511 4.183308206
7892512 4.214769117
7892513 1.995486347
7892514 7.021249228
7892515 7.762210394
7892516 4.876024465
7892517 4.338719234
7892518 1.393403653
7892519 1.742626413
7892520 7.350704177

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458660_IPF_1028_1.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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