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Sample GSM2458658 Query DataSets for GSM2458658
Status Public on Jan 14, 2017
Title IPF_1027, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.915964007
7892502 2.169135155
7892503 1.78339704
7892504 7.633986203
7892505 2.040600427
7892506 2.025904957
7892507 4.512393846
7892508 3.460032617
7892509 7.83554841
7892510 2.680007286
7892511 4.313173544
7892512 2.836567494
7892513 2.176420185
7892514 7.114764362
7892515 7.780777027
7892516 5.413384193
7892517 3.744849563
7892518 2.128538903
7892519 3.558873984
7892520 7.344416526

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458658_IPF_1027_3.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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