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Sample GSM2458656 Query DataSets for GSM2458656
Status Public on Jan 14, 2017
Title IPF_1026, Timepoint 4
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 4
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.879338725
7892502 2.818457138
7892503 1.724338394
7892504 6.820642877
7892505 2.806930858
7892506 2.19564953
7892507 3.354713637
7892508 2.817876222
7892509 8.02537128
7892510 1.810337018
7892511 3.941721065
7892512 3.416616727
7892513 1.823261859
7892514 7.443014081
7892515 7.684172672
7892516 5.220785208
7892517 5.642278617
7892518 1.206633478
7892519 1.696328198
7892520 7.020592644

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458656_IPF_1026_4.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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