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Sample GSM2458651 Query DataSets for GSM2458651
Status Public on Jan 14, 2017
Title IPF_1025, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.589529495
7892502 2.032074362
7892503 2.223802034
7892504 7.328183385
7892505 2.625069648
7892506 1.993378603
7892507 3.41265535
7892508 2.09426772
7892509 6.739345838
7892510 2.026742231
7892511 3.745920668
7892512 3.074887146
7892513 3.001860399
7892514 7.099417285
7892515 8.337716428
7892516 3.305172037
7892517 4.328650392
7892518 1.349054335
7892519 2.216752268
7892520 7.176024927

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458651_IPF_1025_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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