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Sample GSM2458650 Query DataSets for GSM2458650
Status Public on Jan 14, 2017
Title IPF_1025, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.476199602
7892502 2.480699012
7892503 2.516459597
7892504 7.23705397
7892505 1.899706616
7892506 2.186211421
7892507 4.344953379
7892508 3.357430535
7892509 7.583398781
7892510 2.36775442
7892511 4.916020796
7892512 3.52606937
7892513 2.737903314
7892514 6.998470112
7892515 8.026107387
7892516 5.159600386
7892517 3.793495893
7892518 1.304258969
7892519 2.322471078
7892520 7.304754388

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458650_IPF_1025_1.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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