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Sample GSM2458649 Query DataSets for GSM2458649
Status Public on Jan 14, 2017
Title IPF_1025, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: male
survival (months): 30
age (years): 68
fvc: 50
dlco: 18.5
composite_end_point: 1
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.654641157
7892502 2.634226691
7892503 2.502794993
7892504 7.513573877
7892505 1.80227219
7892506 1.853928156
7892507 5.489429448
7892508 3.739490675
7892509 7.767999151
7892510 3.442859986
7892511 4.242755902
7892512 3.869528696
7892513 2.133135229
7892514 6.896631905
7892515 8.326153977
7892516 4.430597721
7892517 4.428768247
7892518 1.510145154
7892519 1.642889759
7892520 7.809763789

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458649_IPF_1025_0.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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