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Sample GSM2458648 Query DataSets for GSM2458648
Status Public on Jan 14, 2017
Title IPF_1024, Timepoint 4
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 4
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 3.086810005
7892502 1.780662769
7892503 1.893622698
7892504 7.984759626
7892505 1.333133378
7892506 1.520277275
7892507 2.680114257
7892508 1.853977255
7892509 7.788421895
7892510 1.533525126
7892511 4.45995503
7892512 3.459200481
7892513 1.523306732
7892514 7.270814582
7892515 8.668633198
7892516 3.703782923
7892517 5.442726236
7892518 2.276686066
7892519 2.39530793
7892520 7.797285535

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458648_IPF_1024_4.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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