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Sample GSM2458647 Query DataSets for GSM2458647
Status Public on Jan 14, 2017
Title IPF_1024, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.669634138
7892502 3.111393446
7892503 2.749571794
7892504 6.862912799
7892505 2.501724587
7892506 2.590023019
7892507 3.182090606
7892508 3.529045142
7892509 7.63232673
7892510 2.841803992
7892511 3.702519406
7892512 2.240004254
7892513 1.384503891
7892514 6.967348901
7892515 7.769842567
7892516 5.285786347
7892517 4.576891218
7892518 2.352379908
7892519 2.859801525
7892520 7.083953574

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458647_IPF_1024_2.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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