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Sample GSM2458646 Query DataSets for GSM2458646
Status Public on Jan 14, 2017
Title IPF_1024, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.272895049
7892502 3.01820808
7892503 1.901359998
7892504 7.834523776
7892505 1.51284004
7892506 2.079723364
7892507 4.753599456
7892508 3.32047281
7892509 8.274325768
7892510 1.876778287
7892511 4.070863829
7892512 2.672641685
7892513 1.677126369
7892514 7.380806145
7892515 8.305122276
7892516 5.515287233
7892517 3.592386931
7892518 1.386495988
7892519 1.914132882
7892520 8.199210735

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458646_IPF_1024_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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