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Sample GSM2458643 Query DataSets for GSM2458643
Status Public on Jan 14, 2017
Title IPF_1023, Timepoint 1
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.468295075
7892502 2.345153945
7892503 1.844300907
7892504 7.244601081
7892505 2.398933485
7892506 2.469557791
7892507 4.879217952
7892508 3.099715248
7892509 7.408775977
7892510 1.996030311
7892511 4.295919478
7892512 2.399877174
7892513 2.226595514
7892514 7.287485582
7892515 7.771275751
7892516 4.509784285
7892517 4.511537233
7892518 2.01316775
7892519 1.402005251
7892520 7.253555741

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458643_IPF_1023_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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