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Sample GSM2458641 Query DataSets for GSM2458641
Status Public on Jan 14, 2017
Title IPF_1020, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.406318928
7892502 2.885258994
7892503 2.556828655
7892504 7.476058359
7892505 3.452952797
7892506 1.84538763
7892507 3.032558613
7892508 2.709382352
7892509 7.054226747
7892510 1.807620124
7892511 3.274577484
7892512 4.225370181
7892513 1.4525579
7892514 6.192768389
7892515 8.309252629
7892516 2.736997959
7892517 4.808075816
7892518 1.741500923
7892519 2.384254961
7892520 7.680291738

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458641_IPF_1020_3.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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