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Sample GSM2458640 Query DataSets for GSM2458640
Status Public on Jan 14, 2017
Title IPF_1020, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 3.526022329
7892502 2.239477957
7892503 1.244512619
7892504 6.836407859
7892505 2.416536806
7892506 2.446246451
7892507 4.680653958
7892508 2.664802321
7892509 7.886375456
7892510 2.998761231
7892511 4.466002875
7892512 4.049301719
7892513 2.863892615
7892514 7.443708035
7892515 8.281258018
7892516 6.038739978
7892517 5.10793256
7892518 2.404636707
7892519 1.938232434
7892520 7.434114407

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458640_IPF_1020_2.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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