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Sample GSM2458638 Query DataSets for GSM2458638
Status Public on Jan 14, 2017
Title IPF_1019, Timepoint 4
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 4
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.562941707
7892502 2.430513814
7892503 1.736761343
7892504 7.152168428
7892505 1.329951496
7892506 3.248212643
7892507 3.629124285
7892508 1.972665552
7892509 7.654482536
7892510 2.328817774
7892511 4.602103969
7892512 3.31276446
7892513 1.763392422
7892514 6.910427919
7892515 7.927587745
7892516 5.522209555
7892517 5.356932725
7892518 1.845832001
7892519 2.517969849
7892520 7.138740265

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458638_IPF_1019_4.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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