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Sample GSM2458637 Query DataSets for GSM2458637
Status Public on Jan 14, 2017
Title IPF_1019, Timepoint 3
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 2.977462563
7892502 3.1040362
7892503 1.961940817
7892504 6.99100455
7892505 2.030701432
7892506 3.236021957
7892507 4.797306107
7892508 3.772675238
7892509 7.597447359
7892510 2.258007701
7892511 4.041504537
7892512 4.103869725
7892513 1.437087903
7892514 7.452547174
7892515 8.338094546
7892516 4.391293656
7892517 5.211332701
7892518 1.922921955
7892519 2.352515008
7892520 7.43883461

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458637_IPF_1019_3.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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