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Sample GSM2458633 Query DataSets for GSM2458633
Status Public on Jan 14, 2017
Title IPF_1018, Timepoint 3
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.475513576
7892502 3.247099906
7892503 2.005906148
7892504 8.107646168
7892505 1.199787162
7892506 2.715009637
7892507 4.033362058
7892508 2.071428511
7892509 7.949572852
7892510 4.202307601
7892511 4.041050231
7892512 3.93935264
7892513 1.904516589
7892514 7.238744036
7892515 7.808222919
7892516 5.684728289
7892517 4.233230055
7892518 1.677180673
7892519 1.807219518
7892520 7.505839098

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458633_IPF_1018_3.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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