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Sample GSM2458632 Query DataSets for GSM2458632
Status Public on Jan 14, 2017
Title IPF_1018, Timepoint 2
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.958608639
7892502 3.262890337
7892503 1.762695647
7892504 7.252794911
7892505 1.275902016
7892506 2.780428599
7892507 3.427094153
7892508 3.860490668
7892509 8.129428316
7892510 3.310270125
7892511 4.05458117
7892512 3.805994638
7892513 3.031996759
7892514 7.035346389
7892515 8.209385895
7892516 4.561400614
7892517 4.938267972
7892518 2.072614961
7892519 1.897609065
7892520 7.414856006

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458632_IPF_1018_2.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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