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Sample GSM2458631 Query DataSets for GSM2458631
Status Public on Jan 14, 2017
Title IPF_1018, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.694112339
7892502 1.985871957
7892503 1.898454307
7892504 7.915525593
7892505 2.322747543
7892506 2.970026692
7892507 4.567993349
7892508 2.745120878
7892509 7.792281657
7892510 2.013840086
7892511 3.991159101
7892512 4.230526086
7892513 1.353924176
7892514 6.740610807
7892515 8.632469366
7892516 4.491892063
7892517 4.570708904
7892518 1.279574025
7892519 2.49809693
7892520 7.49134836

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458631_IPF_1018_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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