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Sample GSM2458627 Query DataSets for GSM2458627
Status Public on Jan 14, 2017
Title IPF_1014, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.58495754
7892502 2.32031465
7892503 2.288945223
7892504 7.336047608
7892505 1.807737843
7892506 1.579107848
7892507 2.391439668
7892508 2.5904439
7892509 7.509613246
7892510 3.115134863
7892511 3.332917904
7892512 4.059438194
7892513 2.041688868
7892514 6.929092259
7892515 8.051963597
7892516 3.640737931
7892517 4.935980839
7892518 1.739830739
7892519 1.986032815
7892520 7.428904357

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458627_IPF_1014_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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