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Sample GSM2458623 Query DataSets for GSM2458623
Status Public on Jan 14, 2017
Title IPF_1013, Timepoint 4
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 4
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.504035217
7892502 2.765977758
7892503 2.604898689
7892504 7.484347589
7892505 1.520981702
7892506 2.023863804
7892507 3.621019111
7892508 2.428233565
7892509 7.493638482
7892510 2.849596196
7892511 3.788238448
7892512 3.707998153
7892513 2.418173024
7892514 7.168515985
7892515 7.945931264
7892516 3.409087321
7892517 4.554649815
7892518 1.218869393
7892519 1.428488429
7892520 7.734181647

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458623_IPF_1013_4.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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