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Sample GSM2458622 Query DataSets for GSM2458622
Status Public on Jan 14, 2017
Title IPF_1013, Timepoint 3
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 2.292292083
7892502 2.26190394
7892503 1.567472869
7892504 7.098203353
7892505 1.807783946
7892506 2.500665865
7892507 2.26368042
7892508 4.161096867
7892509 7.5802886
7892510 3.373409613
7892511 4.298326135
7892512 3.459020981
7892513 1.860218018
7892514 6.466929423
7892515 7.837374827
7892516 3.039742291
7892517 4.624271704
7892518 1.628690866
7892519 2.161860327
7892520 7.373660032

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458622_IPF_1013_3.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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