GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2458621 Query DataSets for GSM2458621
Status Public on Jan 14, 2017
Title IPF_1013, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.375495858
7892502 2.382127445
7892503 1.910126194
7892504 7.913482549
7892505 2.029628086
7892506 2.36593841
7892507 5.050633692
7892508 2.329452951
7892509 8.035473252
7892510 2.273558036
7892511 3.629183104
7892512 3.788878777
7892513 2.035156855
7892514 7.512558093
7892515 8.262412038
7892516 3.603734148
7892517 3.946698769
7892518 2.84959559
7892519 2.660523545
7892520 7.895881034

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458621_IPF_1013_2.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap