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Sample GSM2458620 Query DataSets for GSM2458620
Status Public on Jan 14, 2017
Title IPF_1013, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.741916465
7892502 2.878068
7892503 2.130382018
7892504 7.178511057
7892505 2.200068191
7892506 1.648495719
7892507 3.485758153
7892508 1.768515028
7892509 8.421606939
7892510 2.857228027
7892511 4.197601312
7892512 3.712506772
7892513 2.446966607
7892514 6.757616454
7892515 7.941361937
7892516 4.931193927
7892517 4.772857839
7892518 1.391597312
7892519 2.443460671
7892520 7.476318777

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458620_IPF_1013_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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