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Sample GSM2458618 Query DataSets for GSM2458618
Status Public on Jan 14, 2017
Title IPF_1012, Timepoint 4
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 4
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.776768484
7892502 1.831803136
7892503 2.315706815
7892504 7.108716774
7892505 1.942577773
7892506 2.506857363
7892507 4.735415395
7892508 2.102144235
7892509 6.04839333
7892510 2.009538187
7892511 4.473129631
7892512 3.935973814
7892513 2.422556991
7892514 5.369968052
7892515 7.909685925
7892516 5.324297993
7892517 5.176972974
7892518 1.619631932
7892519 4.191248452
7892520 7.519828132

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458618_IPF_1012_4.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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