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Sample GSM2458617 Query DataSets for GSM2458617
Status Public on Jan 14, 2017
Title IPF_1012, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.234083403
7892502 3.155144447
7892503 2.597933061
7892504 7.834647342
7892505 2.442289536
7892506 2.480004858
7892507 4.605657784
7892508 2.026961784
7892509 6.572715453
7892510 2.838351273
7892511 4.777075891
7892512 3.280238901
7892513 2.18176101
7892514 7.352334241
7892515 8.704878537
7892516 4.437847509
7892517 3.894346676
7892518 1.453385054
7892519 2.499365326
7892520 8.24169192

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458617_IPF_1012_2.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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