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Sample GSM2458613 Query DataSets for GSM2458613
Status Public on Jan 14, 2017
Title IPF_1011, Timepoint 2
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.640315749
7892502 2.468400386
7892503 2.036605693
7892504 7.639384988
7892505 1.793592779
7892506 2.199126216
7892507 3.210915924
7892508 1.759251463
7892509 7.921887483
7892510 3.786132405
7892511 4.791240337
7892512 3.643110858
7892513 2.231069191
7892514 6.877009129
7892515 8.470107483
7892516 4.961119268
7892517 4.96358637
7892518 1.93887273
7892519 1.640437629
7892520 7.019166327

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458613_IPF_1011_2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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