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Sample GSM2458612 Query DataSets for GSM2458612
Status Public on Jan 14, 2017
Title IPF_1011, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 3.035995694
7892502 2.797231017
7892503 1.44607529
7892504 8.01791732
7892505 1.788052957
7892506 1.198087589
7892507 3.69743226
7892508 3.991117586
7892509 7.944549788
7892510 3.461151106
7892511 4.471787517
7892512 3.155887196
7892513 2.257809809
7892514 6.947701183
7892515 8.462943142
7892516 5.576876422
7892517 4.199848803
7892518 1.436548868
7892519 2.827343428
7892520 7.51974855

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458612_IPF_1011_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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