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Sample GSM2458610 Query DataSets for GSM2458610
Status Public on Jan 14, 2017
Title IPF_1010, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.422195204
7892502 3.663840338
7892503 2.261967562
7892504 7.506671874
7892505 2.046261786
7892506 2.47033206
7892507 4.053837437
7892508 2.177512092
7892509 6.67026532
7892510 2.184362778
7892511 4.54677278
7892512 3.45290742
7892513 2.749655611
7892514 6.915560174
7892515 8.243685778
7892516 3.773918948
7892517 4.997568687
7892518 2.297145824
7892519 1.538257762
7892520 7.62179484

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458610_IPF_1010_2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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