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Sample GSM2458609 Query DataSets for GSM2458609
Status Public on Jan 14, 2017
Title IPF_1010, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: male
survival (months): 3
age (years): 75
fvc: 51.3
dlco: 26
composite_end_point: 1
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.690565195
7892502 1.311098693
7892503 3.473991947
7892504 7.637313422
7892505 1.595220016
7892506 2.84103457
7892507 3.909860441
7892508 2.270422119
7892509 7.153973733
7892510 2.177047521
7892511 3.703096961
7892512 3.028236852
7892513 2.090944702
7892514 6.670799775
7892515 8.206718439
7892516 4.301371758
7892517 4.393081767
7892518 1.496377921
7892519 1.790987781
7892520 7.931626608

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458609_IPF_1010_0.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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