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Sample GSM2458608 Query DataSets for GSM2458608
Status Public on Jan 14, 2017
Title IPF_1009, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.865259384
7892502 1.879177124
7892503 2.059865627
7892504 7.57829813
7892505 1.869553699
7892506 1.750921443
7892507 3.599607543
7892508 3.024077397
7892509 8.500996544
7892510 2.743444395
7892511 3.980237552
7892512 4.372340687
7892513 4.249113418
7892514 7.286254153
7892515 8.437629136
7892516 5.543582182
7892517 4.199216823
7892518 1.570236233
7892519 2.903689979
7892520 7.651178489

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458608_IPF_1009_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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