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Sample GSM2458603 Query DataSets for GSM2458603
Status Public on Jan 14, 2017
Title IPF_1007, Timepoint 3
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.741056731
7892502 2.118825206
7892503 1.827858707
7892504 7.653049537
7892505 1.544300804
7892506 3.878397774
7892507 3.971722452
7892508 2.358995336
7892509 7.55374295
7892510 2.566884861
7892511 4.741717277
7892512 3.338455096
7892513 1.812968067
7892514 6.607716552
7892515 8.033032917
7892516 3.802115031
7892517 4.383805932
7892518 1.851869494
7892519 2.010570738
7892520 7.384493771

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458603_IPF_1007_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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