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Sample GSM2458602 Query DataSets for GSM2458602
Status Public on Jan 14, 2017
Title IPF_1007, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 3.34040792
7892502 2.593284791
7892503 2.393738308
7892504 7.754895686
7892505 2.202769784
7892506 2.169749563
7892507 4.623517503
7892508 4.25163718
7892509 7.134408143
7892510 2.063281749
7892511 4.37233552
7892512 1.9252667
7892513 2.575126856
7892514 7.877478276
7892515 8.598686577
7892516 6.226978386
7892517 3.546712104
7892518 1.195668355
7892519 2.674080123
7892520 7.702960893

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458602_IPF_1007_2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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