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Sample GSM2458601 Query DataSets for GSM2458601
Status Public on Jan 14, 2017
Title IPF_1007, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.040272668
7892502 2.51957958
7892503 2.011266697
7892504 7.542207441
7892505 1.654512327
7892506 1.358107649
7892507 4.977311539
7892508 2.486832409
7892509 8.07002757
7892510 3.695965323
7892511 4.50860504
7892512 4.098051829
7892513 2.08111528
7892514 7.194340953
7892515 8.021035837
7892516 5.149589603
7892517 4.42813064
7892518 1.535423781
7892519 1.808091145
7892520 7.586471294

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458601_IPF_1007_1.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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