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Sample GSM2458599 Query DataSets for GSM2458599
Status Public on Jan 14, 2017
Title IPF_1006, Timepoint 3
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.865227572
7892502 2.13837892
7892503 2.196200892
7892504 7.061593375
7892505 1.546272423
7892506 2.307504163
7892507 3.567300757
7892508 2.160831363
7892509 6.675296626
7892510 2.296138617
7892511 3.829181187
7892512 4.873241171
7892513 1.748409155
7892514 6.988979096
7892515 7.82333663
7892516 4.783765679
7892517 4.968081582
7892518 1.252923894
7892519 2.144446403
7892520 7.119114117

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458599_IPF_1006_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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