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Sample GSM2458597 Query DataSets for GSM2458597
Status Public on Jan 14, 2017
Title IPF_1006, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: male
survival (months): 11
age (years): 75
fvc: 37.4
dlco: 29.8
composite_end_point: 1
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.450990317
7892502 1.360857485
7892503 3.006322569
7892504 7.131422055
7892505 2.193918148
7892506 3.292293138
7892507 4.798818969
7892508 2.601485904
7892509 7.716862258
7892510 3.024883036
7892511 4.348886512
7892512 2.910964998
7892513 2.551381181
7892514 6.723652407
7892515 8.215202309
7892516 5.329575515
7892517 4.708236632
7892518 1.703812851
7892519 1.635017602
7892520 7.387807246

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458597_IPF_1006_0.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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