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Sample GSM2458594 Query DataSets for GSM2458594
Status Public on Jan 14, 2017
Title IPF_1004, Timepoint 3
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 3
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 3.479229096
7892502 2.364373128
7892503 2.122387494
7892504 7.814269223
7892505 3.267040769
7892506 2.149689562
7892507 3.857223581
7892508 3.543136057
7892509 7.646840504
7892510 2.580312365
7892511 4.554820076
7892512 3.994606988
7892513 3.860761811
7892514 7.185616971
7892515 8.325754085
7892516 4.7019885
7892517 4.580796788
7892518 1.355570347
7892519 2.430886991
7892520 7.65342093

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458594_IPF_1004_3.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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