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Sample GSM2458593 Query DataSets for GSM2458593
Status Public on Jan 14, 2017
Title IPF_1004, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.555468261
7892502 2.142361713
7892503 2.249276275
7892504 7.7334321
7892505 1.663755218
7892506 2.549328873
7892507 4.666616595
7892508 1.936057494
7892509 7.274894051
7892510 2.443733723
7892511 3.857864045
7892512 4.186408537
7892513 1.841210055
7892514 6.921160376
7892515 8.244022766
7892516 4.828344273
7892517 4.814907992
7892518 1.278154723
7892519 1.810999298
7892520 7.581879614

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458593_IPF_1004_2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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