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Sample GSM2458592 Query DataSets for GSM2458592
Status Public on Jan 14, 2017
Title IPF_1004, Timepoint 1
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 1
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 3.284001025
7892502 2.904546284
7892503 1.753737696
7892504 7.598897074
7892505 2.177747801
7892506 2.061783932
7892507 3.206230574
7892508 4.014284535
7892509 7.534649188
7892510 1.769578294
7892511 3.057752723
7892512 3.022435432
7892513 1.754789978
7892514 6.893358105
7892515 8.093740758
7892516 4.936501531
7892517 3.701124889
7892518 1.041917302
7892519 1.845265157
7892520 7.133750907

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458592_IPF_1004_1.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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