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Sample GSM2458591 Query DataSets for GSM2458591
Status Public on Jan 14, 2017
Title IPF_1004, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: male
survival (months): 12
age (years): 75
fvc: 58.7
dlco: 39.1
composite_end_point: 1
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.635316066
7892502 2.009608605
7892503 2.376705753
7892504 8.178507384
7892505 1.721692966
7892506 1.38596164
7892507 2.311867523
7892508 4.36463844
7892509 7.464857492
7892510 2.672979635
7892511 3.96056071
7892512 6.732839836
7892513 1.559429273
7892514 6.901747844
7892515 8.394344575
7892516 5.68639643
7892517 4.658095421
7892518 1.724055857
7892519 1.765368348
7892520 7.678835797

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458591_IPF_1004_0.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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