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Sample GSM2458588 Query DataSets for GSM2458588
Status Public on Jan 14, 2017
Title IPF_1003, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 1.561955248
7892502 2.081405025
7892503 2.017522386
7892504 7.551289553
7892505 1.742337158
7892506 2.637944762
7892507 4.710399232
7892508 3.153380097
7892509 7.997554814
7892510 2.681912885
7892511 4.248082503
7892512 4.338149026
7892513 1.365025017
7892514 7.305631199
7892515 8.472351667
7892516 4.108817449
7892517 5.316274899
7892518 1.271280503
7892519 2.032720481
7892520 7.62442458

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458588_IPF_1003_2.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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