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Sample GSM2458584 Query DataSets for GSM2458584
Status Public on Jan 14, 2017
Title IPF_1001, Timepoint 2
Sample type RNA
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: Idiopathic Pulmonary Fibrosis
gender: NA
survival (months): NA
age (years): NA
fvc: NA
dlco: NA
composite_end_point: NA
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description IPF, Timepoint 2
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
7892501 2.303502179
7892502 2.357935948
7892503 2.337951552
7892504 7.855643291
7892505 2.572528459
7892506 1.825645143
7892507 4.05448612
7892508 2.92607138
7892509 6.811000875
7892510 3.158954215
7892511 5.005112298
7892512 4.279515852
7892513 1.879003658
7892514 6.902067744
7892515 8.346874752
7892516 5.217005361
7892517 5.471877494
7892518 1.753818532
7892519 2.098454119
7892520 7.865787311

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.

Supplementary file Size Download File type/resource
GSM2458584_IPF_1001_2.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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