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Sample GSM2458578 Query DataSets for GSM2458578
Status Public on Jan 14, 2017
Title Control_5, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: control
gender: male
survival (months): 34
age (years): 48
fvc: NA
dlco: NA
composite_end_point: 0
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description Control, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.645439401
7892502 3.38646512
7892503 2.138243165
7892504 8.678949035
7892505 3.089303552
7892506 2.44360466
7892507 4.610872403
7892508 2.217979195
7892509 8.03341638
7892510 2.64354121
7892511 4.347886234
7892512 3.514805263
7892513 1.296240199
7892514 7.586793175
7892515 8.535747287
7892516 2.739925726
7892517 4.482618636
7892518 1.527999534
7892519 1.777784214
7892520 8.40480131

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458578_Control_5_0.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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