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Sample GSM2458572 Query DataSets for GSM2458572
Status Public on Jan 14, 2017
Title Control_18, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: control
gender: female
survival (months): 34
age (years): 74
fvc: NA
dlco: NA
composite_end_point: 0
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description Control, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.654301997
7892502 2.017585033
7892503 2.003160731
7892504 7.779325675
7892505 1.998344436
7892506 1.440622856
7892507 4.51206636
7892508 3.418828559
7892509 8.91273433
7892510 3.123411042
7892511 4.346141193
7892512 3.582979111
7892513 1.663061421
7892514 7.80492637
7892515 8.540941434
7892516 5.875799937
7892517 5.306924346
7892518 1.956508756
7892519 1.965628073
7892520 7.785839783

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458572_Control_18_0.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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