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Sample GSM2458571 Query DataSets for GSM2458571
Status Public on Jan 14, 2017
Title Control_17, Timepoint 0
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics tissue: whole blood
disease state: control
gender: female
survival (months): 34
age (years): 79
fvc: NA
dlco: NA
composite_end_point: 0
Extracted molecule total RNA
Extraction protocol The PAXgene Blood RNA Kit (PreAnalytiX) was used to isolate RNA according to the manufacturer’s protocol.
Label biotin
Label protocol Samples were fragmented and labelled using the Encore® Biotin Module Kit (NuGEN)
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit material.
Scan protocol Affymetrix GeneTitan
Description Control, Timepoint 0
Data processing Data were processed using Affymetrix Power Tools. RMA background correction were applied to probe intensities, gene level expression were summarized from the intensities and then quantile normalized.
 
Submission date Jan 13, 2017
Last update date Jan 14, 2017
Contact name Philip Molyneaux
Organization name Imperial College London
Street address Dovehouse Street
City London
ZIP/Postal code SW3 6PT
Country United Kingdom
 
Platform ID GPL11532
Series (1)
GSE93606 Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and quantile normalized gene level expression values from RMA

Data table
ID_REF VALUE
7892501 1.50137485
7892502 2.872434596
7892503 2.309657713
7892504 8.286411755
7892505 1.733483098
7892506 1.824070339
7892507 5.183812758
7892508 3.502072016
7892509 8.72968238
7892510 2.914413023
7892511 5.462656528
7892512 4.187072225
7892513 2.288544354
7892514 7.087083146
7892515 7.604960057
7892516 5.744034749
7892517 4.539323546
7892518 2.180081632
7892519 1.719242263
7892520 7.630005156

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM2458571_Control_17_0.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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