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Sample GSM2429085 Query DataSets for GSM2429085
Status Public on Jul 07, 2017
Title RNAseq-hNCC-ZIKVPR-2 [HiSeq 3000]
Sample type SRA
Source name hNCC
Organism Homo sapiens
Characteristics virus infection: ZIKV-PRVABC59
Extracted molecule total RNA
Extraction protocol RNA was extracted by Trizol.
RNA-seq libraries were constructed with Illumina True-seq kit
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
Description Illumina HiSeq3000
Data processing RNA-seq reads were aligned using tophat v2.0.8 and differential RPKM expression values were extracted using cuffdiff v2.2.1
Genome_build: hg19
Supplementary_files_format_and_content: RNAseq gene expression value in cufflink fpkm_tracking file format
Submission date Dec 14, 2016
Last update date May 15, 2019
Contact name Peng Jin
Phone 4047273729
Organization name Emory University
Department Human Genetics
Lab Jin Lab
Street address 615 Michael St., Rm 325
City Atlanta
State/province Georgia
ZIP/Postal code 30322
Country USA
Platform ID GPL21290
Series (1)
GSE87750 Zika virus directly infects human peripheral neurons and induces cell death
BioSample SAMN06141751
SRA SRX2423033

Supplementary data files not provided
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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