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| Status |
Public on Jul 07, 2017 |
| Title |
RNAseq-hNCC-ZIKVPR-1 [HiSeq 3000] |
| Sample type |
SRA |
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| Source name |
hNCC
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| Organism |
Homo sapiens |
| Characteristics |
virus infection: ZIKV-PRVABC59
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted by Trizol.
RNA-seq libraries were constructed with Illumina True-seq kit
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
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| Description |
Illumina HiSeq3000
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| Data processing |
RNA-seq reads were aligned using tophat v2.0.8 and differential RPKM expression values were extracted using cuffdiff v2.2.1
Genome_build: hg19
Supplementary_files_format_and_content: RNAseq gene expression value in cufflink fpkm_tracking file format
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| Submission date |
Dec 14, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Peng Jin |
| E-mail(s) |
peng.jin@emory.edu
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| Phone |
4047273729
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| Organization name |
Emory University
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| Department |
Human Genetics
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| Lab |
Jin Lab
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| Street address |
615 Michael St., Rm 325
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| City |
Atlanta |
| State/province |
Georgia |
| ZIP/Postal code |
30322 |
| Country |
USA |
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| Platform ID |
GPL21290 |
| Series (1) |
| GSE87750 |
Zika virus directly infects human peripheral neurons and induces cell death |
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| Relations |
| BioSample |
SAMN06141752 |
| SRA |
SRX2423032 |
| Supplementary data files not provided |
SRA Run Selector |
| Processed data are available on Series record |
| Raw data are available in SRA |
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