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Sample GSM2409882 Query DataSets for GSM2409882
Status Public on Sep 30, 2017
Title Thy1 RGCs, rep1
Sample type RNA
Source name retinal cells
Organism Mus musculus
Characteristics strain: C57BL/6
developmental age: postnatal day 6
tissue: retina
cell type: Thy1+ retinal cells
neuron subtype: Retinal ganglion cells (RGCs)
Treatment protocol Papain-dissociated retinal cell suspension.
Growth protocol Postnatal day 6 mice.
Extracted molecule total RNA
Extraction protocol PicoPure RNA Isolation Kit (MDS).
Label biotin
Label protocol MessageAmp II-biotin system (Ambion). Two rounds of amplification were used.
Hybridization protocol 20ug of aRNA were fragmented and hybridized according to standard Affymetrix protocols for 16 h at 45 degrees C. Arrays were washed and stained in Affymetrix Fluidics Station 450.
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description Thy1-a
Data processing Data were analyzed in dChip
Submission date Nov 29, 2016
Last update date Sep 30, 2017
Contact name Yi-Rong Peng
Organization name University of California, Los Angeles
Department Department of Ophthalmology
Lab Yi-Rong Peng
Street address 100 Stein Plaza Driveway, B-133
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
Platform ID GPL1261
Series (2)
GSE90648 A gene expression database for retinal neuron subtypes
GSE90673 Expression profiles of retinal neuronal cells

Data table header descriptions
VALUE dChip signal intensity

Data table
1415670_at 118.192347
1415671_at 1840.557985
1415672_at 1065.086145
1415673_at 63.424567
1415674_a_at 407.251346
1415675_at 291.009445
1415676_a_at 556.347584
1415677_at 101.875527
1415678_at 1358.236319
1415679_at 546.528164
1415680_at 111.584448
1415681_at 162.740802
1415682_at 63.867147
1415683_at 281.995634
1415684_at 84.051247
1415685_at 170.875149
1415686_at 737.604711
1415687_a_at 1118.248965
1415688_at 1588.807496
1415689_s_at 123.447854

Total number of rows: 45101

Table truncated, full table size 950 Kbytes.

Supplementary file Size Download File type/resource
GSM2409882_Thy1a.CEL.gz 2.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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