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Sample GSM2409879 Query DataSets for GSM2409879
Status Public on Sep 30, 2017
Title Hb9 RGCs, rep2
Sample type RNA
 
Source name retinal cells
Organism Mus musculus
Characteristics strain: C57BL/6
developmental age: postnatal day 6
tissue: retina
cell type: GFP+ Thy1+ retinal cells
neuron subtype: Hb9 retinal ganglion cells (RGCs)
Treatment protocol Papain-dissociated retinal cell suspension.
Growth protocol Postnatal day 6 mice.
Extracted molecule total RNA
Extraction protocol PicoPure RNA Isolation Kit (MDS).
Label biotin
Label protocol MessageAmp II-biotin system (Ambion). Two rounds of amplification were used.
 
Hybridization protocol 20ug of aRNA were fragmented and hybridized according to standard Affymetrix protocols for 16 h at 45 degrees C. Arrays were washed and stained in Affymetrix Fluidics Station 450.
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description Hb9-B
Data processing Data were analyzed in dChip
 
Submission date Nov 29, 2016
Last update date Sep 30, 2017
Contact name Yi-Rong Peng
E-mail(s) yirongpeng@gmail.com
Organization name University of California, Los Angeles
Department Department of Ophthalmology
Lab Yi-Rong Peng
Street address 100 Stein Plaza Driveway, B-133
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL1261
Series (2)
GSE90648 A gene expression database for retinal neuron subtypes
GSE90673 Expression profiles of retinal neuronal cells

Data table header descriptions
ID_REF
VALUE dChip signal intensity

Data table
ID_REF VALUE
1415670_at 147.790719
1415671_at 1864.04233
1415672_at 1239.186524
1415673_at 65.68197
1415674_a_at 532.193553
1415675_at 328.849053
1415676_a_at 660.420282
1415677_at 120.482245
1415678_at 1284.874418
1415679_at 586.209866
1415680_at 104.477249
1415681_at 181.502589
1415682_at 72.222239
1415683_at 290.201363
1415684_at 109.006527
1415685_at 238.6865
1415686_at 817.529724
1415687_a_at 701.01153
1415688_at 1573.13372
1415689_s_at 201.443476

Total number of rows: 45101

Table truncated, full table size 951 Kbytes.




Supplementary file Size Download File type/resource
GSM2409879_Hb9_B.CEL.gz 2.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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