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Sample GSM2407478 Query DataSets for GSM2407478
Status Public on Nov 25, 2017
Title TW40
Sample type RNA
 
Source name tumor
Organism Homo sapiens
Characteristics disease state: NKTL
preparation: FFPE
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
 
Hybridization protocol Hybridization was performed according to NuGEN specifications.
Scan protocol Scanning was performed on a GeneChip Scanner 3000.
Data processing Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
 
Submission date Nov 28, 2016
Last update date Nov 25, 2017
Contact name Siok-Bian Ng
E-mail(s) patnsb@nus.edu.sg
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL10739
Series (2)
GSE90597 Molecular heterogeneity of NK/T-cell lymphoma (expression)
GSE90784 Molecular heterogeneity of NK/T-cell lymphoma

Data table header descriptions
ID_REF
VALUE log2-expression intensity

Data table
ID_REF VALUE
7892501 3.494053179
7892502 4.884777095
7892503 4.487496142
7892504 11.40928594
7892505 3.738998727
7892506 4.482941824
7892507 5.900829906
7892508 4.333591752
7892509 8.491596455
7892510 3.175532918
7892511 3.77082237
7892512 6.797810659
7892513 3.320103532
7892514 11.68231783
7892515 11.30262524
7892516 8.27629026
7892517 6.881417595
7892518 2.627679017
7892519 7.202408901
7892520 11.14928254

Total number of rows: 257430

Table truncated, full table size 4999 Kbytes.




Supplementary file Size Download File type/resource
GSM2407478_TW40.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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