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Sample GSM2407473 Query DataSets for GSM2407473
Status Public on Nov 25, 2017
Title TW34
Sample type RNA
 
Source name tumor
Organism Homo sapiens
Characteristics disease state: NKTL
preparation: FFPE
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using RecoverAll Total Nucleic Acid Isolation (ThermoFisher Scientific, USA) according to manufacturer's instructions.
Label biotin
Label protocol Amplification and labeling of RNA samples were performed using the Ovation FFPE WTA system (NuGEN, USA).
 
Hybridization protocol Hybridization was performed according to NuGEN specifications.
Scan protocol Scanning was performed on a GeneChip Scanner 3000.
Data processing Data processed with FRMA algorithm using R/Bioconductor system's frma and oligo packages.
 
Submission date Nov 28, 2016
Last update date Nov 25, 2017
Contact name Siok-Bian Ng
E-mail(s) patnsb@nus.edu.sg
Organization name National University Health System, Singapore
Department Department of Pathology
Street address National University Hospital, 5 Lower Kent Ridge Road, Main Building, level 3
City Singapore
ZIP/Postal code 119074
Country Singapore
 
Platform ID GPL10739
Series (2)
GSE90597 Molecular heterogeneity of NK/T-cell lymphoma (expression)
GSE90784 Molecular heterogeneity of NK/T-cell lymphoma

Data table header descriptions
ID_REF
VALUE log2-expression intensity

Data table
ID_REF VALUE
7892501 3.289766099
7892502 6.5867944
7892503 4.629758251
7892504 11.57871861
7892505 6.810297813
7892506 2.766849298
7892507 3.759846511
7892508 8.35976141
7892509 4.863228522
7892510 3.144007701
7892511 7.669185081
7892512 5.949023933
7892513 3.920601139
7892514 12.12823368
7892515 11.74489959
7892516 6.313594882
7892517 5.881665543
7892518 4.794544104
7892519 8.112022629
7892520 11.68615868

Total number of rows: 257430

Table truncated, full table size 4999 Kbytes.




Supplementary file Size Download File type/resource
GSM2407473_TW34.CEL.gz 3.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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